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2015 bioconductor org packages release bioc  (CellCarta)


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    CellCarta 2015 bioconductor org packages release bioc
    2015 Bioconductor Org Packages Release Bioc, supplied by CellCarta, used in various techniques. Bioz Stars score: 99/100, based on 184 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/2015+bioconductor+org+packages+release+bioc/CellEngine/pm36384130-301-82-86
    Average 99 stars, based on 184 article reviews
    2015 bioconductor org packages release bioc - by Bioz Stars, 2026-11
    99/100 stars

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    Related Articles

    Immunodetection:

    Article Title: Gestationally dependent immune organization at the maternal-fetal interface.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Poly(I:C) LMW Invivogen Cat#tlrl-picw Iododeoxyuridine Sigma-Aldrich Cat #I7125 Cisplatin Sigma Aldrich Cat#P4394 Critical commercial assays K2EDTA evacuated blood collection tubes Fisher Scientific Cat#02-683-99A RBC Lysis Buffer BioLegend Cat#420301 Accutase Sigma Aldrich Cat##SCR005 FOXP3 Transcription Factor Staining Buffer Set eBioscience Cat#00-5523-00 MaxPar X8 Antibody Labeling kit Fluidigm Sciences Cat#201300 TruStain FcX BioLegend Cat#101320 Cell-ID Intercalator-Ir Fluidigm Sciences Cat#201192 M.O.M. .. Immunodetection Kit Vector Laboratories Cat#BMK-2202 Deposited data Raw mass cytometry data This study, Mendeley Data https://doi.org/10.17632/45gz4r28s2.1 Experimental models: Organisms/strains Mouse: B6 The Jackson Laboratory RRID: IMSR_JAX:000664 Mouse: B6.SJL-Ptprca Pepcb/BoyJ The Jackson Laboratory RRID: IMSR_JAX:002014 Oligonucleotides Sex genotyping forward primer: 5-CTGAAGCTTTTGGCTTTGAG-30 This study N/A Sex genotyping reverse primer: 5-CCGCTGCCAAATTCTTTGC-30 This study N/A Software and algorithms R R Core Team, 2022 r-project.org Python N/A python.org ParkerICI/premessa N/A https://github.com/ParkerICI/premessa Cydar Lun et al., 2017 bioconductor.org/packages/release/bioc/ html/cydar.html gee N/A =CRAN.R-project.org/package = gee limma Ritchie et al., 2015 bioconductor.org/packages/release/bioc/ html/limma.html CellEngine CellCarta, Montreal, Canada cellengine.com Single Cell Debarcoder Zunder et al. 2015 github.com/nolanlab/ single-cell-debarcoder BioRender BioRender biorender.com Scanpy Wolf et al., 2018 scanpy.readthedocs.io SciKit Learn Pedregosa et al., 2011 scikit-learn.org scikit-bio The scikit-bio development team scikit-bio.org SciPy Virtanen et al., 2020 scipy.org statsmodels Seabold and Perktold, 2010 statsmodels.org Other Microarray gene expression of developing mouse decidua and placenta Knox and Baker, 2008 GEO: GSE11220 Immune associated genes Immport immport.org/resources Vascular development gene dataset The Jackson Laboratory GO:0001944 Cell Reports 41, 111651, November 15, 2022 e2 ..

    Article Title: Gestationally dependent immune organization at the maternal-fetal interface
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Poly(I:C) LMW Invivogen Cat#tlrl-picw Iododeoxyuridine Sigma-Aldrich Cat #I7125 Cisplatin Sigma Aldrich Cat#P4394 Critical commercial assays K2EDTA evacuated blood collection tubes Fisher Scientific Cat#02-683-99A RBC Lysis Buffer BioLegend Cat#420301 Accutase Sigma Aldrich Cat##SCR005 FOXP3 Transcription Factor Staining Buffer Set eBioscience Cat#00-5523-00 MaxPar X8 Antibody Labeling kit Fluidigm Sciences Cat#201300 TruStain FcX BioLegend Cat#101320 Cell-ID Intercalator-Ir Fluidigm Sciences Cat#201192 M.O.M. .. Immunodetection Kit Vector Laboratories Cat#BMK-2202 Deposited data Raw mass cytometry data This study, Mendeley Data https://doi.org/10.17632/45gz4r28s2.1 Experimental models: Organisms/strains Mouse: B6 The Jackson Laboratory RRID: IMSR_JAX:000664 Mouse: B6.SJL-Ptprca Pepcb/BoyJ The Jackson Laboratory RRID: IMSR_JAX:002014 Oligonucleotides Sex genotyping forward primer: 5-CTGAAGCTTTTGGCTTTGAG-30 This study N/A Sex genotyping reverse primer: 5-CCGCTGCCAAATTCTTTGC-30 This study N/A Software and algorithms R R Core Team, 2022 r-project.org Python N/A python.org ParkerICI/premessa N/A https://github.com/ParkerICI/premessa Cydar Lun et al., 2017 bioconductor.org/packages/release/bioc/ html/cydar.html gee N/A =CRAN.R-project.org/package = gee limma Ritchie et al., 2015 bioconductor.org/packages/release/bioc/ html/limma.html CellEngine CellCarta, Montreal, Canada cellengine.com Single Cell Debarcoder Zunder et al. 2015 github.com/nolanlab/ single-cell-debarcoder BioRender BioRender biorender.com Scanpy Wolf et al., 2018 scanpy.readthedocs.io SciKit Learn Pedregosa et al., 2011 scikit-learn.org scikit-bio The scikit-bio development team scikit-bio.org SciPy Virtanen et al., 2020 scipy.org statsmodels Seabold and Perktold, 2010 statsmodels.org Other Microarray gene expression of developing mouse decidua and placenta Knox and Baker, 2008 GEO: GSE11220 Immune associated genes Immport immport.org/resources Vascular development gene dataset The Jackson Laboratory GO:0001944 Cell Reports 41, 111651, November 15, 2022 e2 Resource ll OPEN ACCESS Resource ll OPEN ACCESS ..

    Mass Cytometry:

    Article Title: Gestationally dependent immune organization at the maternal-fetal interface.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Poly(I:C) LMW Invivogen Cat#tlrl-picw Iododeoxyuridine Sigma-Aldrich Cat #I7125 Cisplatin Sigma Aldrich Cat#P4394 Critical commercial assays K2EDTA evacuated blood collection tubes Fisher Scientific Cat#02-683-99A RBC Lysis Buffer BioLegend Cat#420301 Accutase Sigma Aldrich Cat##SCR005 FOXP3 Transcription Factor Staining Buffer Set eBioscience Cat#00-5523-00 MaxPar X8 Antibody Labeling kit Fluidigm Sciences Cat#201300 TruStain FcX BioLegend Cat#101320 Cell-ID Intercalator-Ir Fluidigm Sciences Cat#201192 M.O.M. .. Immunodetection Kit Vector Laboratories Cat#BMK-2202 Deposited data Raw mass cytometry data This study, Mendeley Data https://doi.org/10.17632/45gz4r28s2.1 Experimental models: Organisms/strains Mouse: B6 The Jackson Laboratory RRID: IMSR_JAX:000664 Mouse: B6.SJL-Ptprca Pepcb/BoyJ The Jackson Laboratory RRID: IMSR_JAX:002014 Oligonucleotides Sex genotyping forward primer: 5-CTGAAGCTTTTGGCTTTGAG-30 This study N/A Sex genotyping reverse primer: 5-CCGCTGCCAAATTCTTTGC-30 This study N/A Software and algorithms R R Core Team, 2022 r-project.org Python N/A python.org ParkerICI/premessa N/A https://github.com/ParkerICI/premessa Cydar Lun et al., 2017 bioconductor.org/packages/release/bioc/ html/cydar.html gee N/A =CRAN.R-project.org/package = gee limma Ritchie et al., 2015 bioconductor.org/packages/release/bioc/ html/limma.html CellEngine CellCarta, Montreal, Canada cellengine.com Single Cell Debarcoder Zunder et al. 2015 github.com/nolanlab/ single-cell-debarcoder BioRender BioRender biorender.com Scanpy Wolf et al., 2018 scanpy.readthedocs.io SciKit Learn Pedregosa et al., 2011 scikit-learn.org scikit-bio The scikit-bio development team scikit-bio.org SciPy Virtanen et al., 2020 scipy.org statsmodels Seabold and Perktold, 2010 statsmodels.org Other Microarray gene expression of developing mouse decidua and placenta Knox and Baker, 2008 GEO: GSE11220 Immune associated genes Immport immport.org/resources Vascular development gene dataset The Jackson Laboratory GO:0001944 Cell Reports 41, 111651, November 15, 2022 e2 ..

    Article Title: Gestationally dependent immune organization at the maternal-fetal interface
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Poly(I:C) LMW Invivogen Cat#tlrl-picw Iododeoxyuridine Sigma-Aldrich Cat #I7125 Cisplatin Sigma Aldrich Cat#P4394 Critical commercial assays K2EDTA evacuated blood collection tubes Fisher Scientific Cat#02-683-99A RBC Lysis Buffer BioLegend Cat#420301 Accutase Sigma Aldrich Cat##SCR005 FOXP3 Transcription Factor Staining Buffer Set eBioscience Cat#00-5523-00 MaxPar X8 Antibody Labeling kit Fluidigm Sciences Cat#201300 TruStain FcX BioLegend Cat#101320 Cell-ID Intercalator-Ir Fluidigm Sciences Cat#201192 M.O.M. .. Immunodetection Kit Vector Laboratories Cat#BMK-2202 Deposited data Raw mass cytometry data This study, Mendeley Data https://doi.org/10.17632/45gz4r28s2.1 Experimental models: Organisms/strains Mouse: B6 The Jackson Laboratory RRID: IMSR_JAX:000664 Mouse: B6.SJL-Ptprca Pepcb/BoyJ The Jackson Laboratory RRID: IMSR_JAX:002014 Oligonucleotides Sex genotyping forward primer: 5-CTGAAGCTTTTGGCTTTGAG-30 This study N/A Sex genotyping reverse primer: 5-CCGCTGCCAAATTCTTTGC-30 This study N/A Software and algorithms R R Core Team, 2022 r-project.org Python N/A python.org ParkerICI/premessa N/A https://github.com/ParkerICI/premessa Cydar Lun et al., 2017 bioconductor.org/packages/release/bioc/ html/cydar.html gee N/A =CRAN.R-project.org/package = gee limma Ritchie et al., 2015 bioconductor.org/packages/release/bioc/ html/limma.html CellEngine CellCarta, Montreal, Canada cellengine.com Single Cell Debarcoder Zunder et al. 2015 github.com/nolanlab/ single-cell-debarcoder BioRender BioRender biorender.com Scanpy Wolf et al., 2018 scanpy.readthedocs.io SciKit Learn Pedregosa et al., 2011 scikit-learn.org scikit-bio The scikit-bio development team scikit-bio.org SciPy Virtanen et al., 2020 scipy.org statsmodels Seabold and Perktold, 2010 statsmodels.org Other Microarray gene expression of developing mouse decidua and placenta Knox and Baker, 2008 GEO: GSE11220 Immune associated genes Immport immport.org/resources Vascular development gene dataset The Jackson Laboratory GO:0001944 Cell Reports 41, 111651, November 15, 2022 e2 Resource ll OPEN ACCESS Resource ll OPEN ACCESS ..

    Software:

    Article Title: Gestationally dependent immune organization at the maternal-fetal interface.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Poly(I:C) LMW Invivogen Cat#tlrl-picw Iododeoxyuridine Sigma-Aldrich Cat #I7125 Cisplatin Sigma Aldrich Cat#P4394 Critical commercial assays K2EDTA evacuated blood collection tubes Fisher Scientific Cat#02-683-99A RBC Lysis Buffer BioLegend Cat#420301 Accutase Sigma Aldrich Cat##SCR005 FOXP3 Transcription Factor Staining Buffer Set eBioscience Cat#00-5523-00 MaxPar X8 Antibody Labeling kit Fluidigm Sciences Cat#201300 TruStain FcX BioLegend Cat#101320 Cell-ID Intercalator-Ir Fluidigm Sciences Cat#201192 M.O.M. .. Immunodetection Kit Vector Laboratories Cat#BMK-2202 Deposited data Raw mass cytometry data This study, Mendeley Data https://doi.org/10.17632/45gz4r28s2.1 Experimental models: Organisms/strains Mouse: B6 The Jackson Laboratory RRID: IMSR_JAX:000664 Mouse: B6.SJL-Ptprca Pepcb/BoyJ The Jackson Laboratory RRID: IMSR_JAX:002014 Oligonucleotides Sex genotyping forward primer: 5-CTGAAGCTTTTGGCTTTGAG-30 This study N/A Sex genotyping reverse primer: 5-CCGCTGCCAAATTCTTTGC-30 This study N/A Software and algorithms R R Core Team, 2022 r-project.org Python N/A python.org ParkerICI/premessa N/A https://github.com/ParkerICI/premessa Cydar Lun et al., 2017 bioconductor.org/packages/release/bioc/ html/cydar.html gee N/A =CRAN.R-project.org/package = gee limma Ritchie et al., 2015 bioconductor.org/packages/release/bioc/ html/limma.html CellEngine CellCarta, Montreal, Canada cellengine.com Single Cell Debarcoder Zunder et al. 2015 github.com/nolanlab/ single-cell-debarcoder BioRender BioRender biorender.com Scanpy Wolf et al., 2018 scanpy.readthedocs.io SciKit Learn Pedregosa et al., 2011 scikit-learn.org scikit-bio The scikit-bio development team scikit-bio.org SciPy Virtanen et al., 2020 scipy.org statsmodels Seabold and Perktold, 2010 statsmodels.org Other Microarray gene expression of developing mouse decidua and placenta Knox and Baker, 2008 GEO: GSE11220 Immune associated genes Immport immport.org/resources Vascular development gene dataset The Jackson Laboratory GO:0001944 Cell Reports 41, 111651, November 15, 2022 e2 ..

    Article Title: Gestationally dependent immune organization at the maternal-fetal interface
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Poly(I:C) LMW Invivogen Cat#tlrl-picw Iododeoxyuridine Sigma-Aldrich Cat #I7125 Cisplatin Sigma Aldrich Cat#P4394 Critical commercial assays K2EDTA evacuated blood collection tubes Fisher Scientific Cat#02-683-99A RBC Lysis Buffer BioLegend Cat#420301 Accutase Sigma Aldrich Cat##SCR005 FOXP3 Transcription Factor Staining Buffer Set eBioscience Cat#00-5523-00 MaxPar X8 Antibody Labeling kit Fluidigm Sciences Cat#201300 TruStain FcX BioLegend Cat#101320 Cell-ID Intercalator-Ir Fluidigm Sciences Cat#201192 M.O.M. .. Immunodetection Kit Vector Laboratories Cat#BMK-2202 Deposited data Raw mass cytometry data This study, Mendeley Data https://doi.org/10.17632/45gz4r28s2.1 Experimental models: Organisms/strains Mouse: B6 The Jackson Laboratory RRID: IMSR_JAX:000664 Mouse: B6.SJL-Ptprca Pepcb/BoyJ The Jackson Laboratory RRID: IMSR_JAX:002014 Oligonucleotides Sex genotyping forward primer: 5-CTGAAGCTTTTGGCTTTGAG-30 This study N/A Sex genotyping reverse primer: 5-CCGCTGCCAAATTCTTTGC-30 This study N/A Software and algorithms R R Core Team, 2022 r-project.org Python N/A python.org ParkerICI/premessa N/A https://github.com/ParkerICI/premessa Cydar Lun et al., 2017 bioconductor.org/packages/release/bioc/ html/cydar.html gee N/A =CRAN.R-project.org/package = gee limma Ritchie et al., 2015 bioconductor.org/packages/release/bioc/ html/limma.html CellEngine CellCarta, Montreal, Canada cellengine.com Single Cell Debarcoder Zunder et al. 2015 github.com/nolanlab/ single-cell-debarcoder BioRender BioRender biorender.com Scanpy Wolf et al., 2018 scanpy.readthedocs.io SciKit Learn Pedregosa et al., 2011 scikit-learn.org scikit-bio The scikit-bio development team scikit-bio.org SciPy Virtanen et al., 2020 scipy.org statsmodels Seabold and Perktold, 2010 statsmodels.org Other Microarray gene expression of developing mouse decidua and placenta Knox and Baker, 2008 GEO: GSE11220 Immune associated genes Immport immport.org/resources Vascular development gene dataset The Jackson Laboratory GO:0001944 Cell Reports 41, 111651, November 15, 2022 e2 Resource ll OPEN ACCESS Resource ll OPEN ACCESS ..

    Single Cell:

    Article Title: Gestationally dependent immune organization at the maternal-fetal interface.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Poly(I:C) LMW Invivogen Cat#tlrl-picw Iododeoxyuridine Sigma-Aldrich Cat #I7125 Cisplatin Sigma Aldrich Cat#P4394 Critical commercial assays K2EDTA evacuated blood collection tubes Fisher Scientific Cat#02-683-99A RBC Lysis Buffer BioLegend Cat#420301 Accutase Sigma Aldrich Cat##SCR005 FOXP3 Transcription Factor Staining Buffer Set eBioscience Cat#00-5523-00 MaxPar X8 Antibody Labeling kit Fluidigm Sciences Cat#201300 TruStain FcX BioLegend Cat#101320 Cell-ID Intercalator-Ir Fluidigm Sciences Cat#201192 M.O.M. .. Immunodetection Kit Vector Laboratories Cat#BMK-2202 Deposited data Raw mass cytometry data This study, Mendeley Data https://doi.org/10.17632/45gz4r28s2.1 Experimental models: Organisms/strains Mouse: B6 The Jackson Laboratory RRID: IMSR_JAX:000664 Mouse: B6.SJL-Ptprca Pepcb/BoyJ The Jackson Laboratory RRID: IMSR_JAX:002014 Oligonucleotides Sex genotyping forward primer: 5-CTGAAGCTTTTGGCTTTGAG-30 This study N/A Sex genotyping reverse primer: 5-CCGCTGCCAAATTCTTTGC-30 This study N/A Software and algorithms R R Core Team, 2022 r-project.org Python N/A python.org ParkerICI/premessa N/A https://github.com/ParkerICI/premessa Cydar Lun et al., 2017 bioconductor.org/packages/release/bioc/ html/cydar.html gee N/A =CRAN.R-project.org/package = gee limma Ritchie et al., 2015 bioconductor.org/packages/release/bioc/ html/limma.html CellEngine CellCarta, Montreal, Canada cellengine.com Single Cell Debarcoder Zunder et al. 2015 github.com/nolanlab/ single-cell-debarcoder BioRender BioRender biorender.com Scanpy Wolf et al., 2018 scanpy.readthedocs.io SciKit Learn Pedregosa et al., 2011 scikit-learn.org scikit-bio The scikit-bio development team scikit-bio.org SciPy Virtanen et al., 2020 scipy.org statsmodels Seabold and Perktold, 2010 statsmodels.org Other Microarray gene expression of developing mouse decidua and placenta Knox and Baker, 2008 GEO: GSE11220 Immune associated genes Immport immport.org/resources Vascular development gene dataset The Jackson Laboratory GO:0001944 Cell Reports 41, 111651, November 15, 2022 e2 ..

    Article Title: Gestationally dependent immune organization at the maternal-fetal interface
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Poly(I:C) LMW Invivogen Cat#tlrl-picw Iododeoxyuridine Sigma-Aldrich Cat #I7125 Cisplatin Sigma Aldrich Cat#P4394 Critical commercial assays K2EDTA evacuated blood collection tubes Fisher Scientific Cat#02-683-99A RBC Lysis Buffer BioLegend Cat#420301 Accutase Sigma Aldrich Cat##SCR005 FOXP3 Transcription Factor Staining Buffer Set eBioscience Cat#00-5523-00 MaxPar X8 Antibody Labeling kit Fluidigm Sciences Cat#201300 TruStain FcX BioLegend Cat#101320 Cell-ID Intercalator-Ir Fluidigm Sciences Cat#201192 M.O.M. .. Immunodetection Kit Vector Laboratories Cat#BMK-2202 Deposited data Raw mass cytometry data This study, Mendeley Data https://doi.org/10.17632/45gz4r28s2.1 Experimental models: Organisms/strains Mouse: B6 The Jackson Laboratory RRID: IMSR_JAX:000664 Mouse: B6.SJL-Ptprca Pepcb/BoyJ The Jackson Laboratory RRID: IMSR_JAX:002014 Oligonucleotides Sex genotyping forward primer: 5-CTGAAGCTTTTGGCTTTGAG-30 This study N/A Sex genotyping reverse primer: 5-CCGCTGCCAAATTCTTTGC-30 This study N/A Software and algorithms R R Core Team, 2022 r-project.org Python N/A python.org ParkerICI/premessa N/A https://github.com/ParkerICI/premessa Cydar Lun et al., 2017 bioconductor.org/packages/release/bioc/ html/cydar.html gee N/A =CRAN.R-project.org/package = gee limma Ritchie et al., 2015 bioconductor.org/packages/release/bioc/ html/limma.html CellEngine CellCarta, Montreal, Canada cellengine.com Single Cell Debarcoder Zunder et al. 2015 github.com/nolanlab/ single-cell-debarcoder BioRender BioRender biorender.com Scanpy Wolf et al., 2018 scanpy.readthedocs.io SciKit Learn Pedregosa et al., 2011 scikit-learn.org scikit-bio The scikit-bio development team scikit-bio.org SciPy Virtanen et al., 2020 scipy.org statsmodels Seabold and Perktold, 2010 statsmodels.org Other Microarray gene expression of developing mouse decidua and placenta Knox and Baker, 2008 GEO: GSE11220 Immune associated genes Immport immport.org/resources Vascular development gene dataset The Jackson Laboratory GO:0001944 Cell Reports 41, 111651, November 15, 2022 e2 Resource ll OPEN ACCESS Resource ll OPEN ACCESS ..

    Microarray:

    Article Title: Gestationally dependent immune organization at the maternal-fetal interface.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Poly(I:C) LMW Invivogen Cat#tlrl-picw Iododeoxyuridine Sigma-Aldrich Cat #I7125 Cisplatin Sigma Aldrich Cat#P4394 Critical commercial assays K2EDTA evacuated blood collection tubes Fisher Scientific Cat#02-683-99A RBC Lysis Buffer BioLegend Cat#420301 Accutase Sigma Aldrich Cat##SCR005 FOXP3 Transcription Factor Staining Buffer Set eBioscience Cat#00-5523-00 MaxPar X8 Antibody Labeling kit Fluidigm Sciences Cat#201300 TruStain FcX BioLegend Cat#101320 Cell-ID Intercalator-Ir Fluidigm Sciences Cat#201192 M.O.M. .. Immunodetection Kit Vector Laboratories Cat#BMK-2202 Deposited data Raw mass cytometry data This study, Mendeley Data https://doi.org/10.17632/45gz4r28s2.1 Experimental models: Organisms/strains Mouse: B6 The Jackson Laboratory RRID: IMSR_JAX:000664 Mouse: B6.SJL-Ptprca Pepcb/BoyJ The Jackson Laboratory RRID: IMSR_JAX:002014 Oligonucleotides Sex genotyping forward primer: 5-CTGAAGCTTTTGGCTTTGAG-30 This study N/A Sex genotyping reverse primer: 5-CCGCTGCCAAATTCTTTGC-30 This study N/A Software and algorithms R R Core Team, 2022 r-project.org Python N/A python.org ParkerICI/premessa N/A https://github.com/ParkerICI/premessa Cydar Lun et al., 2017 bioconductor.org/packages/release/bioc/ html/cydar.html gee N/A =CRAN.R-project.org/package = gee limma Ritchie et al., 2015 bioconductor.org/packages/release/bioc/ html/limma.html CellEngine CellCarta, Montreal, Canada cellengine.com Single Cell Debarcoder Zunder et al. 2015 github.com/nolanlab/ single-cell-debarcoder BioRender BioRender biorender.com Scanpy Wolf et al., 2018 scanpy.readthedocs.io SciKit Learn Pedregosa et al., 2011 scikit-learn.org scikit-bio The scikit-bio development team scikit-bio.org SciPy Virtanen et al., 2020 scipy.org statsmodels Seabold and Perktold, 2010 statsmodels.org Other Microarray gene expression of developing mouse decidua and placenta Knox and Baker, 2008 GEO: GSE11220 Immune associated genes Immport immport.org/resources Vascular development gene dataset The Jackson Laboratory GO:0001944 Cell Reports 41, 111651, November 15, 2022 e2 ..

    Article Title: Gestationally dependent immune organization at the maternal-fetal interface
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Poly(I:C) LMW Invivogen Cat#tlrl-picw Iododeoxyuridine Sigma-Aldrich Cat #I7125 Cisplatin Sigma Aldrich Cat#P4394 Critical commercial assays K2EDTA evacuated blood collection tubes Fisher Scientific Cat#02-683-99A RBC Lysis Buffer BioLegend Cat#420301 Accutase Sigma Aldrich Cat##SCR005 FOXP3 Transcription Factor Staining Buffer Set eBioscience Cat#00-5523-00 MaxPar X8 Antibody Labeling kit Fluidigm Sciences Cat#201300 TruStain FcX BioLegend Cat#101320 Cell-ID Intercalator-Ir Fluidigm Sciences Cat#201192 M.O.M. .. Immunodetection Kit Vector Laboratories Cat#BMK-2202 Deposited data Raw mass cytometry data This study, Mendeley Data https://doi.org/10.17632/45gz4r28s2.1 Experimental models: Organisms/strains Mouse: B6 The Jackson Laboratory RRID: IMSR_JAX:000664 Mouse: B6.SJL-Ptprca Pepcb/BoyJ The Jackson Laboratory RRID: IMSR_JAX:002014 Oligonucleotides Sex genotyping forward primer: 5-CTGAAGCTTTTGGCTTTGAG-30 This study N/A Sex genotyping reverse primer: 5-CCGCTGCCAAATTCTTTGC-30 This study N/A Software and algorithms R R Core Team, 2022 r-project.org Python N/A python.org ParkerICI/premessa N/A https://github.com/ParkerICI/premessa Cydar Lun et al., 2017 bioconductor.org/packages/release/bioc/ html/cydar.html gee N/A =CRAN.R-project.org/package = gee limma Ritchie et al., 2015 bioconductor.org/packages/release/bioc/ html/limma.html CellEngine CellCarta, Montreal, Canada cellengine.com Single Cell Debarcoder Zunder et al. 2015 github.com/nolanlab/ single-cell-debarcoder BioRender BioRender biorender.com Scanpy Wolf et al., 2018 scanpy.readthedocs.io SciKit Learn Pedregosa et al., 2011 scikit-learn.org scikit-bio The scikit-bio development team scikit-bio.org SciPy Virtanen et al., 2020 scipy.org statsmodels Seabold and Perktold, 2010 statsmodels.org Other Microarray gene expression of developing mouse decidua and placenta Knox and Baker, 2008 GEO: GSE11220 Immune associated genes Immport immport.org/resources Vascular development gene dataset The Jackson Laboratory GO:0001944 Cell Reports 41, 111651, November 15, 2022 e2 Resource ll OPEN ACCESS Resource ll OPEN ACCESS ..

    Gene Expression:

    Article Title: Gestationally dependent immune organization at the maternal-fetal interface.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Poly(I:C) LMW Invivogen Cat#tlrl-picw Iododeoxyuridine Sigma-Aldrich Cat #I7125 Cisplatin Sigma Aldrich Cat#P4394 Critical commercial assays K2EDTA evacuated blood collection tubes Fisher Scientific Cat#02-683-99A RBC Lysis Buffer BioLegend Cat#420301 Accutase Sigma Aldrich Cat##SCR005 FOXP3 Transcription Factor Staining Buffer Set eBioscience Cat#00-5523-00 MaxPar X8 Antibody Labeling kit Fluidigm Sciences Cat#201300 TruStain FcX BioLegend Cat#101320 Cell-ID Intercalator-Ir Fluidigm Sciences Cat#201192 M.O.M. .. Immunodetection Kit Vector Laboratories Cat#BMK-2202 Deposited data Raw mass cytometry data This study, Mendeley Data https://doi.org/10.17632/45gz4r28s2.1 Experimental models: Organisms/strains Mouse: B6 The Jackson Laboratory RRID: IMSR_JAX:000664 Mouse: B6.SJL-Ptprca Pepcb/BoyJ The Jackson Laboratory RRID: IMSR_JAX:002014 Oligonucleotides Sex genotyping forward primer: 5-CTGAAGCTTTTGGCTTTGAG-30 This study N/A Sex genotyping reverse primer: 5-CCGCTGCCAAATTCTTTGC-30 This study N/A Software and algorithms R R Core Team, 2022 r-project.org Python N/A python.org ParkerICI/premessa N/A https://github.com/ParkerICI/premessa Cydar Lun et al., 2017 bioconductor.org/packages/release/bioc/ html/cydar.html gee N/A =CRAN.R-project.org/package = gee limma Ritchie et al., 2015 bioconductor.org/packages/release/bioc/ html/limma.html CellEngine CellCarta, Montreal, Canada cellengine.com Single Cell Debarcoder Zunder et al. 2015 github.com/nolanlab/ single-cell-debarcoder BioRender BioRender biorender.com Scanpy Wolf et al., 2018 scanpy.readthedocs.io SciKit Learn Pedregosa et al., 2011 scikit-learn.org scikit-bio The scikit-bio development team scikit-bio.org SciPy Virtanen et al., 2020 scipy.org statsmodels Seabold and Perktold, 2010 statsmodels.org Other Microarray gene expression of developing mouse decidua and placenta Knox and Baker, 2008 GEO: GSE11220 Immune associated genes Immport immport.org/resources Vascular development gene dataset The Jackson Laboratory GO:0001944 Cell Reports 41, 111651, November 15, 2022 e2 ..

    Article Title: Gestationally dependent immune organization at the maternal-fetal interface
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Poly(I:C) LMW Invivogen Cat#tlrl-picw Iododeoxyuridine Sigma-Aldrich Cat #I7125 Cisplatin Sigma Aldrich Cat#P4394 Critical commercial assays K2EDTA evacuated blood collection tubes Fisher Scientific Cat#02-683-99A RBC Lysis Buffer BioLegend Cat#420301 Accutase Sigma Aldrich Cat##SCR005 FOXP3 Transcription Factor Staining Buffer Set eBioscience Cat#00-5523-00 MaxPar X8 Antibody Labeling kit Fluidigm Sciences Cat#201300 TruStain FcX BioLegend Cat#101320 Cell-ID Intercalator-Ir Fluidigm Sciences Cat#201192 M.O.M. .. Immunodetection Kit Vector Laboratories Cat#BMK-2202 Deposited data Raw mass cytometry data This study, Mendeley Data https://doi.org/10.17632/45gz4r28s2.1 Experimental models: Organisms/strains Mouse: B6 The Jackson Laboratory RRID: IMSR_JAX:000664 Mouse: B6.SJL-Ptprca Pepcb/BoyJ The Jackson Laboratory RRID: IMSR_JAX:002014 Oligonucleotides Sex genotyping forward primer: 5-CTGAAGCTTTTGGCTTTGAG-30 This study N/A Sex genotyping reverse primer: 5-CCGCTGCCAAATTCTTTGC-30 This study N/A Software and algorithms R R Core Team, 2022 r-project.org Python N/A python.org ParkerICI/premessa N/A https://github.com/ParkerICI/premessa Cydar Lun et al., 2017 bioconductor.org/packages/release/bioc/ html/cydar.html gee N/A =CRAN.R-project.org/package = gee limma Ritchie et al., 2015 bioconductor.org/packages/release/bioc/ html/limma.html CellEngine CellCarta, Montreal, Canada cellengine.com Single Cell Debarcoder Zunder et al. 2015 github.com/nolanlab/ single-cell-debarcoder BioRender BioRender biorender.com Scanpy Wolf et al., 2018 scanpy.readthedocs.io SciKit Learn Pedregosa et al., 2011 scikit-learn.org scikit-bio The scikit-bio development team scikit-bio.org SciPy Virtanen et al., 2020 scipy.org statsmodels Seabold and Perktold, 2010 statsmodels.org Other Microarray gene expression of developing mouse decidua and placenta Knox and Baker, 2008 GEO: GSE11220 Immune associated genes Immport immport.org/resources Vascular development gene dataset The Jackson Laboratory GO:0001944 Cell Reports 41, 111651, November 15, 2022 e2 Resource ll OPEN ACCESS Resource ll OPEN ACCESS ..



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